PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000309351
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 661aa    MW: 73284.5 Da    PI: 8.0167
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000309351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1072.2e-333935331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                    lp+G++F+Ptd+e++ ++L++kv +++      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      +
  MDP0000309351 393 LPAGVKFDPTDQEIL-QHLEAKVLSDTrklhplID--EfipTLEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKVHteedgsE 484
                    799***********9.99****9999956644322..22222333336**********.666777788******************7444465557 PP

            NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++vl+ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  MDP0000309351 485 TRWHKTGKTRPVLV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 533
                    78************.9*************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2003.7E-4680IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561129.97E-5043311IPR011009Protein kinase-like domain
PROSITE profilePS5001123.73667341IPR000719Protein kinase domain
PfamPF077142.0E-2570264IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS0010707395IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.200.205.9E-1481132No hitNo description
Gene3DG3DSA:1.10.510.108.9E-24133268No hitNo description
SuperFamilySSF1019411.57E-37387552IPR003441NAC domain
PROSITE profilePS5100533.91393552IPR003441NAC domain
PfamPF023657.0E-15394533IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MMNHSKHVAY LIIISLLCTS TVILGAVLTL ILLCKKKPVQ TQETPPPTKP SAQVYPLTNI  60
DVATDGFNHR RIVGEGRFGT VYAAIFEKGQ IAAVKRIHSR HVLSNAGFGF SRILRSISLA  120
QHPNIVPIIG YSEGPGERII VMEFVGMVCL DYYLHQNSDG ASLDWNHRLK IAAGAAKGLE  180
YLHEGVAPNI IHGCVKASNI LIDVNFCARL CDYGLSFLAP QEKRGLLGHV DDEYWDGGLG  240
GGGGACKESD VYGFGVVLLE LLSGRLCDEG RLVNWSLPLI KEKRFSEFLD PRLAIPSEIL  300
PLVRLAKVAT ACVEVEEITR RSGVWNEPQR KNGRDQIMTW CNDSDDERAI QIIGAPPPNN  360
PNNPNEFRNI TCPSCGHHIE FQDQAGIHDL PGLPAGVKFD PTDQEILQHL EAKVLSDTRK  420
LHPLIDEFIP TLEGENGICY THPEKLPGVN KDGQIRHFFH RPSKAYTTGT RKRRKVHTEE  480
DGSETRWHKT GKTRPVLVGG AVKGFKKILV LYTNYGRQRK PEKTNWVMHQ YHLGNNEEEK  540
DGELVVSKVF YQTQPRQCGS SKDVPAFDHH KGVNIRGGQG HDGLISAATN PLPPAKKAGL  600
VEYYDPGGPF INYDHHQHNH NQGGDNRESP PQLIPNLVVQ GDGSSFIRLT SDASKGKLER  660
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3tl8_A4e-37353202304BRASSINOSTEROID INSENSITIVE 1-associated rece
3tl8_D4e-37353202304BRASSINOSTEROID INSENSITIVE 1-associated rece
3tl8_G4e-37353202304BRASSINOSTEROID INSENSITIVE 1-associated rece
3tl8_H4e-37353202304BRASSINOSTEROID INSENSITIVE 1-associated rece
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.222261e-123leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981190.0KF198119.1 Malus hupehensis NAC domain protein (NAC43) mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-121NAC domain containing protein 73